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FAM241B

From Wikipedia, the free encyclopedia
FAM241B
Identifiers
AliasesFAM241B, C10orf35, chromosome 10 open reading frame 35, family with sequence similarity 241 member B
External IDsMGI: 1917144; HomoloGene: 12338; GeneCards: FAM241B; OMA:FAM241B - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_145306

NM_027251
NM_001358252
NM_001358253

RefSeq (protein)

NP_660349

NP_081527
NP_001345181
NP_001345182

Location (UCSC)Chr 10: 69.63 – 69.63 MbChr 10: 61.94 – 61.98 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Protein FAM241B is a protein that in humans is encoded by the gene FAM241B (previously C10orf35).[5] Not much is reported about the protein, but it is predicted to be a transmembrane protein.[5] The protein contains the domain of unknown function 4605 (DUF4605)[5] which belongs to the protein family pfam15378.[6]

General characteristics

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The physical properties of the c10orf35 protein were analyzed, and the molecular weight was predicted to be 13.2 kdal,[7] and the isoelectric point was predicted to be 11.5.[7] The properties of DUF4605 were also analyzed, and the molecular weight was predicted to be 6.0 kdal.[7] The isoelectric point was predicted to be 6.9,[7] which is significantly less basic than the full protein.

Properties and structure

[edit]
This image gives a predicted image of the main secondary structure features, conserved regions, and the post-translational modification site.

DUF 4605 is located between amino acids 62 and 92.[5] The secondary structure of the c10orf35 protein was predicted to consist of a β-sheet between amino acids 3 and 5, an α-helix between 61 and 72, and a transmembrane α-helix between 92 and 112.[8] The serine in position 62 can be phosphorylated to form a phosphoserine group.[8]

Expression

[edit]
This image shows the expression of the c10orf35 protein in various human tissues.[9]

The c10orf35 protein has expression over the 75th percentile in the brain, spinal cord, and male reproductive organs.[10] Within the male reproductive system, the RNA is found within the testis and prostate, while the protein is expressed in the epididymis.[11] In the brain, the RNA is found in the cerebral cortex, while the protein is expressed ubiquitously throughout the brain.[11]

Protein interactions

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The c10orf35 protein has been experimentally shown by Affinity Capture-MS to interact with 7 other proteins[5] as shown below.

Interacting Protein Symbol Definition
ATP1B3 ATPase, Na+/K+ Transporting, Beta 3 Polypeptide
CD3E CD3e molecule, epsilon (CD3-TCR complex)
GABRE Gamma-aminobutyric acid (GABA) A receptor, epsilon
HTR3C 5-hydroxytryptamine (serotonin) receptor 3C, ionotropic
LPAR1 Lysophosphatidic acid receptor 1
SGCD Sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)
ZACN Zinc activated ligand-gated ion channel

References

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  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000171224 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000020083 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. 1 2 3 4 5 "c10orf35". National Center For Biotechnology Information (NCBI) Gene.
  6. "Conserved Protein Domain Family DUF4605". National Center For Biotechnology Information (NCBI) Structure. Retrieved 6 May 2016.
  7. 1 2 3 4 "Compute pI/Mw". ExPASy Bioinformatics Research Portal. Retrieved 6 May 2016.
  8. 1 2 "c10orf35". UniProt. Retrieved 9 May 2016.
  9. "Gene Expression Omnibus (GEO) Profile For GDS3834". National Center For Biotechnology Information (NCBI). Retrieved 9 May 2016.
  10. "Gene Expression Omnibus (GEO) Profile". National Center For Biotechnology Information. Retrieved 6 May 2016.
  11. 1 2 "c10orf35". The Human Protein Atlas. Retrieved 6 May 2016.