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// Workers AI · dad joke modeWhat did YASARA say to its date? You're a molecular match.

From Wikipedia, the free encyclopedia
Yet Another Scientific Artificial Reality Application
Original authorsElmar Krieger
Jacobus van Meel
DevelopersYASARA Biosciences
WHAT IF Foundation
Spronk NMR Consultancy
ReleaseNovember 1993; 32 years ago (1993-11)
Stable release
24.10.5 / 5 October 2024
Written inC, assembly, Python
Operating systemWindows, Linux, OS X
Platformx86
Available inEnglish
TypeMolecular modelling
LicenseProprietary, free version for elementary structure work
Websitewww.yasara.org

Yet Another Scientific Artificial Reality Application (YASARA) is a computer program for molecular visualization, modelling and dynamics. It has many scientific uses, as expressed by the large number of scientific articles mentioning the software.[1] The free version of YASARA[2] is well suited to bioinformatics education. A series of freely available bioinformatics courses exist that use this software; see examples thereof at the Center for Molecular and Biomolecular Informatics (CMBI) education pages.[3]

Students working on an educational task using YASARA.
Learning to dock ligands with YASARA.

See also

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References

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Bibliography

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  • Krieger E, Koraimann G, Vriend G (May 2002). "Increasing the precision of comparative models with YASARA NOVA—a self-parameterizing force field". Proteins. 47 (3): 393–402. doi:10.1002/prot.10104. PMID 11948792.
  • Modelling: Krieger E, Vriend G (Feb 2002). "Models@Home: distributed computing in bioinformatics using a screensaver based approach". Bioinformatics. 18 (2): 315–8. doi:10.1093/bioinformatics/18.2.315. PMID 11847079.
  • Dynamics: Krieger E, Darden T, Nabuurs SB, Finkelstein A, Vriend G (Dec 2004). "Making optimal use of empirical energy functions: force-field parameterization in crystal space". Proteins. 57 (4): 678–83. doi:10.1002/prot.20251. PMID 15390263.
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