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// Workers AI · dad joke modeIs Arul Chinnaiyan a gene expert? Because he's a gene-ius.

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From Wikipedia, the free encyclopedia

Arul Chinnaiyan
EducationUniversity of Michigan Medical School
Known forCancer Research
Scientific career
InstitutionsUniversity of Michigan Medical School, Howard Hughes Medical Institute

Arul M. Chinnaiyan is the S.P. Hicks Endowed Professor of Pathology, a Professor of Urology, and the Director of the Michigan Center for Translational Pathology at the University of Michigan Medical School.[1] He is also a Howard Hughes Medical Institute Investigator and an American Cancer Society Research Professor.[2]

Arul Chinnaiyan received both PhD and MD degrees at the University of Michigan Medical School in 1999. He is a cancer researcher and the recipient of the 28th annual American Association for Cancer Research Award for Outstanding Achievement in Cancer Research at the annual meeting of the AACR in April 2008 in San Diego.[3] He was also the leader of a group of scientists who received the inaugural 2007 American Association for Cancer Research "Team Science" Award for their discovery of gene fusions in prostate cancer.[4]

Arul Chinnaiyan received a number of other awards and prizes, including the Burroughs Wellcome Fund Clinical Scientist Award in Translational Research and the Ramzi Cotran Young Investigator Award from the United States and Canadian Academy of Pathology. He is an elected member of the American Society for Clinical Investigation,[5] the Association of American Physicians, the American Academy of Arts and Sciences, the National Academy of Medicine,[6] and the National Academy of Sciences.[7] He received the 2022 Sjöberg Prize[8] and was jointly awarded the Harrington Prize for Innovation in Medicine[9] alongside Charles L. Sawyers.

He is a member of the editorial boards for Oncogene[10] and Cancer Discovery,[11] and serves on the advisory board of Cancer Cell, among other journals.[12]

Research and discovery

[edit]

Arul Chinnaiyan's research focuses on the molecular profiling of cancer to identify novel diagnostic markers and therapeutic targets. In 2005, his group discovered recurrent TMPRSS2-ETS gene fusions in prostate cancer using a bioinformatic outlier-analysis method.[13] This study was the first to establish gene fusions, previously believed to be confined to hematological malignancies, as oncogenic drivers in solid tumors. The TMPRSS2-ERG gene fusion has been incorporated into the 18-gene MyProstateScore 2.0 urine biomarker test for detection of clinically significant prostate cancer.[14] Chinnaiyan developed the MI-ONCOSEQ program at the University of Michigan in 2011, one of the first clinical sequencing programs.[15] MI-ONCOSEQ employs DNA and RNA sequencing to identify actionable mutations in advanced cancer patients and combines this data with clinical information to tailor treatment strategies.[16][17] The MI-ONCOSEQ program has also helped reveal key insights into cancer biology, including the mutational landscape of metastatic castration-resistant prostate cancer (mCRPC),[18] the CDK12-mutant subtype of mCRPC,[19] distinct classes of FOXA1 alterations in mCRPC,[20][21] activating ESR1 mutations in endocrine-resistant breast cancer,[22] FGFR fusions in diverse solid tumors,[23] cancer-related long non-coding RNAs,[24] and circular RNAs.[25] Chinnaiyan's research has identified therapeutically targetable epigenetic regulators and cofactors of transcription factor-driven oncogenesis, with a focus on proteins involved in driving androgen receptor activity in prostate cancer. These include BET bromodomain proteins,[26] the SWI/SNF chromatin remodeling complex,[27] p300/CBP histone acetyltransferases,[28] and NSD2 methyltransferase.[29] His team has also defined the lipid kinase PIKfyve as a therapeutic target in multiple malignancies, including prostate cancer,[30] pancreatic cancer,[31] and gastroenteropancreatic neuroendocrine tumors.[32]

Publications

[edit]

Partial list:

  • Varambally S, Dhanasekaran SM, Zhou M, Barrette TR, Kumar-Sinha C, Sanda MG, Ghosh D, Pienta KJ, Sewalt RG, Otte AP, Rubin MA, Chinnaiyan AM (2002). "The polycomb group protein EZH2 is involved in progression of prostate cancer". Nature. 419 (6907): 624–9. PMID 12374981.
  • Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, Shah RB, Pienta KJ, Rubin MA, Chinnaiyan AM (2005). "Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer". Science. 310 (5748): 644–8. PMID 16254181.
  • Tomlins SA, Laxman B, Dhanasekaran SM, Helgeson BE, Cao X, Morris DS, Menon A, Jing X, Cao Q, Han B, Yu J, Wang L, Montie JE, Rubin MA, Pienta KJ, Roulston D, Shah RB, Varambally S, Mehra R, Chinnaiyan AM (2007). "Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer". Nature. 448 (7153): 595–9. PMID 17671502.
  • Maher CA, Kumar-Sinha C, Cao X, Kalyana-Sundaram S, Han B, Jing X, Sam L, Barrette T, Palanisamy N, Chinnaiyan AM (2009). "Transcriptome sequencing to detect gene fusions in cancer". Nature. 458 (7234): 97–101. PMC 2725402. PMID 19136943.
  • Mani RS, Tomlins SA, Callahan K, Ghosh A, Nyati MK, Varambally S, Palanisamy N, Chinnaiyan AM (2009). "Induced chromosomal proximity and gene fusions in prostate cancer". Science. 326 (5957): 1230. PMC 2935583. PMID 19933109.
  • Palanisamy N, Ateeq B, Kalyana-Sundaram S, Pflueger D, Ramnarayanan K, Shankar S, Han B, Cao Q, Cao X, Suleman K, Kumar-Sinha C, Dhanasekaran SM, Chen YB, Esgueva R, Banerjee S, LaFargue CJ, Siddiqui J, Demichelis F, Moeller P, Bismar TA, Kuefer R, Fullen DR, Johnson TM, Greenson JK, Giordano TJ, Tan P, Tomlins SA, Varambally S, Rubin MA, Maher CA, Chinnaiyan AM (2010). "Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma". Nat Med. 16 (7): 793–8. PMC 2903732. PMID 20526349.
  • Tomlins SA, Aubin SM, Siddiqui J, Lonigro RJ, Sefton-Miller L, Miick S, Williamsen S, Hodge P, Meinke J, Blase A, Penabella Y, Day JR, Varambally R, Han B, Wood D, Wang L, Sanda MG, Rubin MA, Rhodes DR, Hollenbeck B, Sakamoto K, Silberstein JL, Fradet Y, Amberson JB, Meyers S, Palanisamy N, Rittenhouse H, Wei JT, Groskopf J, Chinnaiyan AM (2011). "Urine TMPRSS2:ERG fusion transcript stratifies prostate cancer risk in men with elevated serum PSA". Sci Transl Med. 3 (94): 94ra72. PMC 3245713. PMID 21813756.
  • Roychowdhury S, Iyer MK, Robinson DR, Lonigro RJ, Wu YM, Cao X, Kalyana-Sundaram S, Sam L, Balbin OA, Quist MJ, Barrette T, Everett J, Siddiqui J, Kunju LP, Navone N, Araujo JC, Troncoso P, Logothetis CJ, Innis JW, Smith DC, Lao CD, Kim SY, Roberts JS, Gruber SB, Pienta KJ, Talpaz M, Chinnaiyan AM (2011). "Personalized oncology through integrative high-throughput sequencing: a pilot study". Sci Transl Med. 3 (111): 111ra121. PMC 3476478. PMID 22133722.
  • Robinson DR, Wu YM, Kalyana-Sundaram S, Cao X, Lonigro RJ, Sung YS, Chen CL, Zhang L, Wang R, Su F, Iyer MK, Roychowdhury S, Siddiqui J, Pienta KJ, Kunju LP, Talpaz M, Mosquera JM, Singer S, Schuetze SM, Antonescu CR, Chinnaiyan AM (2013). "Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing". Nat Genet. 45 (2): 180–5. PMC 3654808. PMID 23313952.
  • Wu YM, Su F, Kalyana-Sundaram S, Khazanov N, Ateeq B, Cao X, Lonigro RJ, Vats P, Wang R, Lin SF, Cheng AJ, Kunju LP, Siddiqui J, Tomlins SA, Wyngaard P, Sadis S, Roychowdhury S, Hussain MH, Feng FY, Zalupski MM, Talpaz M, Pienta KJ, Rhodes DR, Robinson DR, Chinnaiyan AM (2013). "Identification of targetable FGFR gene fusions in diverse cancers". Cancer Discov. 3 (6): 636–47. PMC 3694764. PMID 23558953.
  • Robinson DR, Wu YM, Vats P, Su F, Lonigro RJ, Cao X, Kalyana-Sundaram S, Wang R, Ning Y, Hodges L, Gursky A, Siddiqui J, Tomlins SA, Roychowdhury S, Pienta KJ, Kim SY, Roberts JS, Rae JM, Van Poznak CH, Hayes DF, Chugh R, Kunju LP, Talpaz M, Schott AF, Chinnaiyan AM (2013). "Activating ESR1 mutations in hormone-resistant metastatic breast cancer". Nat Genet. 45 (12): 1446–51. PMC 4009946. PMID 24185510.
  • Asangani IA, Dommeti VL, Wang X, Malik R, Cieslik M, Yang R, Escara-Wilke J, Wilder-Romans K, Dhanireddy S, Engelke C, Iyer MK, Jing X, Wu YM, Cao X, Qin ZS, Wang S, Feng FY, Chinnaiyan AM (2014). "Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer". Nature. 510 (7504): 278–82. PMC 4075966. PMID 24759320.
  • Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, Barrette TR, Prensner JR, Evans JR, Zhao S, Poliakov A, Cao X, Dhanasekaran SM, Wu YM, Robinson DR, Beer DG, Feng FY, Iyer HK, Chinnaiyan AM (2015). "The landscape of long noncoding RNAs in the human transcriptome". Nat Genet. 47 (3): 199–208. PMC 4417758. PMID 25599403.
  • Robinson D, Van Allen EM, Wu YM, Schultz N, Lonigro RJ, Mosquera JM, Montgomery B, Taplin ME, Pritchard CC, Attard G, Beltran H, Abida W, Bradley RK, Vinson J, Cao X, Vats P, Kunju LP, Hussain M, Feng FY, Tomlins SA, Cooney KA, Smith DC, Brennan C, Siddiqui J, Mehra R, Chen Y, Rathkopf DE, Morris MJ, Solomon SB, Durack JC, Reuter VE, Gopalan A, Gao J, Loda M, Lis RT, Bowden M, Balk SP, Gaviola G, Sougnez C, Gupta M, Yu EY, Mostaghel EA, Cheng HH, Mulcahy H, True LD, Plymate SR, Dvinge H, Ferraldeschi R, Flohr P, Miranda S, Zafeiriou Z, Tunariu N, Mateo J, Perez-Lopez R, Demichelis F, Robinson BD, Schiffman M, Nanus DM, Tagawa ST, Sigaras A, Eng KW, Elemento O, Sboner A, Heath EI, Scher HI, Pienta KJ, Kantoff P, de Bono JS, Rubin MA, Nelson PS, Garraway LA, Sawyers CL, Chinnaiyan AM (2015). "Integrative clinical genomics of advanced prostate cancer". Cell. 161 (5): 1215–1228. PMC 4484602. PMID 26000489.
  • Mody RJ, Wu YM, Lonigro RJ, Cao X, Roychowdhury S, Vats P, Frank KM, Prensner JR, Asangani I, Palanisamy N, Dillman JR, Rabah RM, Kunju LP, Everett J, Raymond VM, Ning Y, Su F, Wang R, Stoffel EM, Innis JW, Roberts JS, Robertson PL, Yanik G, Chamdin A, Connelly JA, Choi S, Harris AC, Kitko C, Rao RJ, Levine JE, Castle VP, Hutchinson RJ, Talpaz M, Robinson DR, Chinnaiyan AM (2015). "Integrative Clinical Sequencing in the Management of Refractory or Relapsed Cancer in Youth". JAMA. 314 (9): 913–25. PMC 4758114. PMID 26325560.
  • Robinson DR, Wu YM, Lonigro RJ, Vats P, Cobain E, Everett J, Cao X, Rabban E, Kumar-Sinha C, Raymond V, Schuetze S, Alva A, Siddiqui J, Chugh R, Worden F, Zalupski MM, Innis J, Mody RJ, Tomlins SA, Lucas D, Baker LH, Ramnath N, Schott AF, Hayes DF, Vijai J, Offit K, Stoffel EM, Roberts JS, Smith DC, Kunju LP, Talpaz M, Cieslik M, Chinnaiyan AM (2017). "Integrative clinical genomics of metastatic cancer". Nature. 548 (7667): 297–303. PMC 5995337. PMID 28783718.
  • Wu YM, Cieslik M, Lonigro RJ, Vats P, Reimers MA, Cao X, Ning Y, Wang L, Kunju LP, de Sarkar N, Heath EI, Chou J, Feng FY, Nelson PS, de Bono JS, Zou W, Montgomery B, Alva A, Robinson DR, Chinnaiyan AM (2018). "Inactivation of CDK12 Delineates a Distinct Immunogenic Class of Advanced Prostate Cancer". Cell. 173 (7): 1770-1782.e14. PMC 6084431. PMID 29906450.
  • Parolia A, Cieslik M, Chu SC, Xiao L, Ouchi T, Zhang Y, Wang X, Vats P, Cao X, Pitchiaya S, Su F, Wang R, Feng FY, Wu YM, Lonigro RJ, Robinson DR, Chinnaiyan AM (2019). "Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer". Nature. 571 (7765): 413–418. PMC 6661908. PMID 31243372.
  • Cobain EF, Wu YM, Vats P, Chugh R, Worden F, Smith DC, Schuetze SM, Zalupski MM, Sahai V, Alva A, Schott AF, Caram ME, Hayes DF, Stoffel EM, Jacobs MF, Kumar-Sinha C, Cao X, Wang R, Lucas D, Ning Y, Rabban E, Bell J, Camelo-Piragua S, Udager AM, Cieslik M, Lonigro RJ, Kunju LP, Robinson DR, Talpaz M, Chinnaiyan AM (2021). "Assessment of Clinical Benefit of Integrative Genomic Profiling in Advanced Solid Tumors". JAMA Oncol. 7 (4): 525–533. PMC 7907987. PMID 33630025.
  • Xiao L, Parolia A, Qiao Y, Bawa P, Eyunni S, Mannan R, Carson SE, Chang Y, Wang X, Zhang Y, Vo JN, Kregel S, Simko SA, Delekta AD, Jaber M, Zheng H, Apel IJ, McMurry L, Su F, Wang R, Zelenka-Wang S, Sasmal S, Khare L, Mukherjee S, Abbineni C, Aithal K, Bhakta MS, Ghurye J, Cao X, Navone NM, Nesvizhskii AI, Mehra R, Vaishampayan U, Blanchette M, Wang Y, Samajdar S, Ramachandra M, Chinnaiyan AM (2022). "Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer". Nature. 601 (7893): 434–439. PMC 8770127. PMID 34937944.
  • Tosoian JJ, Zhang Y, Xiao L, Xie C, Samora NL, Niknafs YS, Chopra Z, Siddiqui J, Zheng H, Herron G, Vaishampayan N, Robinson HS, Arivoli K, Trock BJ, Ross AE, Morgan TM, Palapattu GS, Salami SS, Kunju LP, Tomlins SA, Sokoll LJ, Chan DW, Srivastava S, Feng Z, Sanda MG, Zheng Y, Wei JT, Chinnaiyan AM (2024). "Development and Validation of an 18-Gene Urine Test for High-Grade Prostate Cancer". JAMA Oncol. 10 (6): 726–736. PMC 11190811. PMID 38635241.
  • Parolia A, Eyunni S, Verma BK, Young E, Liu Y, Liu L, George J, Aras S, Das CK, Mannan R, Ur Rasool R, Mitchell-Velasquez E, Mahapatra S, Luo J, Carson SE, Xiao L, Gajjala PR, Venkatesh S, Jaber M, Wang X, He T, Qiao Y, Pang M, Zhang Y, Tien JC, Louw M, Alhusayan M, Cao X, Su F, Tavana O, Hou C, Wang Z, Ding K, Chinnaiyan AM, Asangani IA (2024). "NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis". Nat Genet. 56 (10): 2132–43. PMC 11525188. PMID 39251788.
  • Cheng C, Hu J, Mannan R, He T, Bhattacharyya R, Magnuson B, Wisniewski JP, Peters S, Karim SA, MacLean DJ, Karaburk H, Zhang L, Rossiter NJ, Zheng Y, Xiao L, Li C, Awad D, Mahapatra S, Bao Y, Zhang Y, Cao X, Wang Z, Mehra R, Morlacchi P, Sahai V, Pasca di Magliano M, Shah YM, Weisman LS, Morton JP, Ding K, Qiao Y, Lyssiotis CA, Chinnaiyan AM (2025). "Targeting PIKfyve-driven lipid metabolism in pancreatic cancer". Nature. 642 (8068): 776–84. PMC 12176661. PMID 40269157.
  • Eyunni S, Mannan R, Zhang Y, Young E, Zhang Q, Luo J, Pang M, Mahapatra S, Tien JC, George JM, Jaber M, Hakkani H, Carson SE, Todd AJ, Hosseini N, Gondal M, Rebernick RJ, Cao X, Su F, Wang R, Mehra R, Li J, Cieslik M, Chinnaiyan AM, Parolia A (2025). "Divergent FOXA1 mutations drive prostate tumorigenesis and therapy-resistant cellular plasticity". Science. 389 (6764): eadv2367. PMC 12326538. PMID 40570057.
  • Luo J, Chen Z, Qiao Y, Tien JC, Young E, Mannan R, Mahapatra S, Bhattacharyya R, Xiao L, He T, Eyunni S, Zhang Y, Zheng Y, Su F, Cao X, Wang R, Cheng Y, Seri R, George J, Shahine M, Miner SJ, Rees MG, Ronan MM, Roth JA, Vaishampayan U, Wang M, Wang S, Parolia A, Chinnaiyan AM (2025). "Targeting histone H2B acetylated enhanceosomes via p300/CBP degradation in prostate cancer". Nat Genet. 57 (10): 2468–2481. PMC 12513837. PMID 41044247.

References

[edit]
  1. ↑ Arul M. Chinnaiyan – University of Michigan Medical School Archived 13 October 2025 at the Wayback Machine
  2. ↑ Arul M. Chinnaiyan – HHMI Archived 19 August 2024 at the Wayback Machine
  3. ↑ List of AACR Award for Outstanding Achievement in Cancer Research Winners Archived 5 May 2008 at the Wayback Machine
  4. ↑ AACR Team Science Award Recipients Archived 10 March 2014 at the Wayback Machine, American Association for Cancer Research Award citation:"In recognition of their landmark discovery of recurrent gene fusions in a majority of prostate cancers, which has profound clinical and biological implications for understanding prostate cancers, and their embodiment of team science through interdisciplinary and inter-institutional collaboration."
  5. ↑ 2 UMHS researchers selected as Howard Hughes Medical Institute investigators. Archived 21 April 2008 at the Wayback Machine University of Michigan Health System Press Release. 12 October 2007
  6. ↑ "Arul Chinnaiyan, MD, PhD". American Association for Cancer Research. Retrieved 15 June 2026.
  7. ↑ Arul M. Chinnaiyan – National Academy of Sciences. Archived 7 December 2025 at the Wayback Machine National Academy of Sciences
  8. ↑ Discovery about a cause of prostate cancer rewarded with the Sjöberg Prize. Archived 15 November 2025 at the Wayback Machine Royal Swedish Academy of Sciences. 14 February 2022
  9. ↑ International Harrington Prize Jointly Awarded to Drs. Arul Chinnaiyan and Charles Sawyers. Archived 10 April 2026 at the Wayback Machine Harrington Discovery Institute. 24 March 2026
  10. ↑ "Editorial Board | Oncogene".
  11. ↑ "Editors | Cancer Discovery". American Association for Cancer Research. Retrieved 15 June 2026.
  12. ↑ "Advisory Board | Cancer Cell". Cell Press. Retrieved 15 June 2026.
  13. ↑ Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, Shah RB, Pienta KJ, Rubin MA, Chinnaiyan AM (2005). "Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer". Science. 310 (5748): 644–8. PMID 16254181.
  14. ↑ Tosoian JJ, Zhang Y, Xiao L, Xie C, Samora NL, Niknafs YS, Chopra Z, Siddiqui J, Zheng H, Herron G, Vaishampayan N, Robinson HS, Arivoli K, Trock BJ, Ross AE, Morgan TM, Palapattu GS, Salami SS, Kunju LP, Tomlins SA, Sokoll LJ, Chan DW, Srivastava S, Feng Z, Sanda MG, Zheng Y, Wei JT, Chinnaiyan AM (2024). "Development and Validation of an 18-Gene Urine Test for High-Grade Prostate Cancer". JAMA Oncol. 10 (6): 726–36. PMC 11190811. PMID 38635241.
  15. ↑ Roychowdhury S, Iyer MK, Robinson DR, Lonigro RJ, Wu YM, Cao X, Kalyana-Sundaram S, Sam L, Balbin OA, Quist MJ, Barrette T, Everett J, Siddiqui J, Kunju LP, Navone N, Araujo JC, Troncoso P, Logothetis CJ, Innis JW, Smith DC, Lao CD, Kim SY, Roberts JS, Gruber SB, Pienta KJ, Talpaz M, Chinnaiyan AM (2011). "Personalized oncology through integrative high-throughput sequencing: a pilot study". Sci Transl Med. 3 (111): 111ra121. PMC 3476478. PMID 22133722.
  16. ↑ Cobain EF, Wu YM, Vats P, Chugh R, Worden F, Smith DC, Schuetze SM, Zalupski MM, Sahai V, Alva A, Schott AF, Caram ME, Hayes DF, Stoffel EM, Jacobs MF, Kumar-Sinha C, Cao X, Wang R, Lucas D, Ning Y, Rabban E, Bell J, Camelo-Piragua S, Udager AM, Cieslik M, Lonigro RJ, Kunju LP, Robinson DR, Talpaz M, Chinnaiyan AM (2021). "Assessment of Clinical Benefit of Integrative Genomic Profiling in Advanced Solid Tumors". JAMA Oncol. 7 (4): 525–33. PMC 7907987. PMID 33630025.
  17. ↑ Robinson DR, Wu YM, Lonigro RJ, Vats P, Cobain E, Everett J, Cao X, Rabban E, Kumar-Sinha C, Raymond V, Schuetze S, Alva A, Siddiqui J, Chugh R, Worden F, Zalupski MM, Innis J, Mody RJ, Tomlins SA, Lucas D, Baker LH, Ramnath N, Schott AF, Hayes DF, Vijai J, Offit K, Stoffel EM, Roberts JS, Smith DC, Kunju LP, Talpaz M, Cieslik M, Chinnaiyan AM (2017). "Integrative clinical genomics of metastatic cancer". Nature. 548 (7667): 297–303. PMC 5995337. PMID 28783718.
  18. ↑ Robinson D, Van Allen EM, Wu YM, Schultz N, Lonigro RJ, Mosquera JM, Montgomery B, Taplin ME, Pritchard CC, Attard G, Beltran H, Abida W, Bradley RK, Vinson J, Cao X, Vats P, Kunju LP, Hussain M, Feng FY, Tomlins SA, Cooney KA, Smith DC, Brennan C, Siddiqui J, Mehra R, Chen Y, Rathkopf DE, Morris MJ, Solomon SB, Durack JC, Reuter VE, Gopalan A, Gao J, Loda M, Lis RT, Bowden M, Balk SP, Gaviola G, Sougnez C, Gupta M, Yu EY, Mostaghel EA, Cheng HH, Mulcahy H, True LD, Plymate SR, Dvinge H, Ferraldeschi R, Flohr P, Miranda S, Zafeiriou Z, Tunariu N, Mateo J, Perez-Lopez R, Demichelis F, Robinson BD, Schiffman M, Nanus DM, Tagawa ST, Sigaras A, Eng KW, Elemento O, Sboner A, Heath EI, Scher HI, Pienta KJ, Kantoff P, de Bono JS, Rubin MA, Nelson PS, Garraway LA, Sawyers CL, Chinnaiyan AM (2015). "Integrative clinical genomics of advanced prostate cancer". Cell. 161 (5): 1215–28. PMC 4484602. PMID 26000489.
  19. ↑ Wu YM, Cieslik M, Lonigro RJ, Vats P, Reimers MA, Cao X, Ning Y, Wang L, Kunju LP, de Sarkar N, Heath EI, Chou J, Feng FY, Nelson PS, de Bono JS, Zou W, Montgomery B, Alva A, Robinson DR, Chinnaiyan AM (2018). "Inactivation of CDK12 Delineates a Distinct Immunogenic Class of Advanced Prostate Cancer". Cell. 173 (7): 1770-82.e14. PMC 6084431. PMID 29906450.
  20. ↑ Eyunni S, Mannan R, Zhang Y, Young E, Zhang Q, Luo J, Pang M, Mahapatra S, Tien JC, George JM, Jaber M, Hakkani H, Carson SE, Todd AJ, Hosseini N, Gondal M, Rebernick RJ, Cao X, Su F, Wang R, Mehra R, Li J, Cieslik M, Chinnaiyan AM, Parolia A (2025). "Divergent FOXA1 mutations drive prostate tumorigenesis and therapy-resistant cellular plasticity". Science. 389 (6764): eadv2367. PMC 12326538. PMID 40570057.
  21. ↑ Parolia A, Cieslik M, Chu SC, Xiao L, Ouchi T, Zhang Y, Wang X, Vats P, Cao X, Pitchiaya S, Su F, Wang R, Feng FY, Wu YM, Lonigro RJ, Robinson DR, Chinnaiyan AM (2019). "Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer". Nature. 571 (7765): 413–8. PMC 6661908. PMID 31243372.
  22. ↑ Robinson DR, Wu YM, Vats P, Su F, Lonigro RJ, Cao X, Kalyana-Sundaram S, Wang R, Ning Y, Hodges L, Gursky A, Siddiqui J, Tomlins SA, Roychowdhury S, Pienta KJ, Kim SY, Roberts JS, Rae JM, Van Poznak CH, Hayes DF, Chugh R, Kunju LP, Talpaz M, Schott AF, Chinnaiyan AM (2013). "Activating ESR1 mutations in hormone-resistant metastatic breast cancer". Nat Genet. 45 (12): 1446–51. PMC 4009946. PMID 24185510.
  23. ↑ Wu YM, Su F, Kalyana-Sundaram S, Khazanov N, Ateeq B, Cao X, Lonigro RJ, Vats P, Wang R, Lin SF, Cheng AJ, Kunju LP, Siddiqui J, Tomlins SA, Wyngaard P, Sadis S, Roychowdhury S, Hussain MH, Feng FY, Zalupski MM, Talpaz M, Pienta KJ, Rhodes DR, Robinson DR, Chinnaiyan AM (2013). "Identification of targetable FGFR gene fusions in diverse cancers". Cancer Discov. 3 (6): 636–47. PMC 3694764. PMID 23558953.
  24. ↑ Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, Barrette TR, Prensner JR, Evans JR, Zhao S, Poliakov A, Cao X, Dhanasekaran SM, Wu YM, Robinson DR, Beer DG, Feng FY, Iyer HK, Chinnaiyan AM (2015). "The landscape of long noncoding RNAs in the human transcriptome". Nat Genet. 47 (3): 199–208. PMC 4417758. PMID 25599403.
  25. ↑ Vo JN, Cieslik M, Zhang Y, Shukla S, Xiao L, Zhang Y, Wu YM, Dhanasekaran SM, Engelke CG, Cao X, Robinson DR, Nesvizhskii AI, Chinnaiyan AM (2019). "The Landscape of Circular RNA in Cancer". Cell. 176 (4): 869-81.e13. PMC 6601354. PMID 30735636.
  26. ↑ Asangani IA, Dommeti VL, Wang X, Malik R, Cieslik M, Yang R, Escara-Wilke J, Wilder-Romans K, Dhanireddy S, Engelke C, Iyer MK, Jing X, Wu YM, Cao X, Qin ZS, Wang S, Feng FY, Chinnaiyan AM (2014). "Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer". Nature. 510 (7504): 278–82. PMC 4075966. PMID 24759320.
  27. ↑ Xiao L, Parolia A, Qiao Y, Bawa P, Eyunni S, Mannan R, Carson SE, Chang Y, Wang X, Zhang Y, Vo JN, Kregel S, Simko SA, Delekta AD, Jaber M, Zheng H, Apel IJ, McMurry L, Su F, Wang R, Zelenka-Wang S, Sasmal S, Khare L, Mukherjee S, Abbineni C, Aithal K, Bhakta MS, Ghurye J, Cao X, Navone NM, Nesvizhskii AI, Mehra R, Vaishampayan U, Blanchette M, Wang Y, Samajdar S, Ramachandra M, Chinnaiyan AM (2022). "Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer". Nature. 601 (7893): 434–9. PMC 8770127. PMID 34937944.
  28. ↑ Luo J, Chen Z, Qiao Y, Tien JC, Young E, Mannan R, Mahapatra S, Bhattacharyya R, Xiao L, He T, Eyunni S, Zhang Y, Zheng Y, Su F, Cao X, Wang R, Cheng Y, Seri R, George J, Shahine M, Miner SJ, Rees MG, Ronan MM, Roth JA, Vaishampayan U, Wang M, Wang S, Parolia A, Chinnaiyan AM (2025). "Targeting histone H2B acetylated enhanceosomes via p300/CBP degradation in prostate cancer". Nat Genet. 57 (10): 2468–81. PMC 12513837. PMID 41044247.
  29. ↑ Parolia A, Eyunni S, Verma BK, Young E, Liu Y, Liu L, George J, Aras S, Das CK, Mannan R, Ur Rasool R, Mitchell-Velasquez E, Mahapatra S, Luo J, Carson SE, Xiao L, Gajjala PR, Venkatesh S, Jaber M, Wang X, He T, Qiao Y, Pang M, Zhang Y, Tien JC, Louw M, Alhusayan M, Cao X, Su F, Tavana O, Hou C, Wang Z, Ding K, Chinnaiyan AM, Asangani IA (2024). "NSD2 is a requisite subunit of the AR/FOXA1 neo-enhanceosome in promoting prostate tumorigenesis". Nat Genet. 56 (10): 2132–43. PMC 11525188. PMID 39251788.
  30. ↑ Qiao Y, Choi JE, Tien JC, Simko SA, Rajendiran T, Vo JN, Delekta AD, Wang L, Xiao L, Hodge NB, Desai P, Mendoza S, Juckette K, Xu A, Soni T, Su F, Wang R, Cao X, Yu J, Kryczek I, Wang XM, Wang X, Siddiqui J, Wang Z, Bernard A, Fernandez-Salas E, Navone NM, Ellison SJ, Ding K, Eskelinen EL, Heath EI, Klionsky DJ, Zou W, Chinnaiyan AM (2021). "Autophagy Inhibition by Targeting PIKfyve Potentiates Response to Immune Checkpoint Blockade in Prostate Cancer". Nat Cancer. 2: 978–93. PMC 8562569. PMID 34738088.
  31. ↑ Cheng C, Hu J, Mannan R, He T, Bhattacharyya R, Magnuson B, Wisniewski JP, Peters S, Karim SA, MacLean DJ, Karaburk H, Zhang L, Rossiter NJ, Zheng Y, Xiao L, Li C, Awad D, Mahapatra S, Bao Y, Zhang Y, Cao X, Wang Z, Mehra R, Morlacchi P, Sahai V, Pasca di Magliano M, Shah YM, Weisman LS, Morton JP, Ding K, Qiao Y, Lyssiotis CA, Chinnaiyan AM (2025). "Targeting PIKfyve-driven lipid metabolism in pancreatic cancer". Nature. 642 (8068): 776–84. PMC 12176661. PMID 40269157.
  32. ↑ Cao Y, Cheng C, Yin Y, Yee SN, Zheng Y, Mahapatra S, Paturu R, Coleski A, VanAken S, Yang F, Pakkan R, Zhao Y, Bhattacharyya R, Miner SJ, Cao X, Mannan R, Li C, Sahai V, Ding K, Lyssiotis CA, Chinnaiyan AM, Qiao Y (2026). "Targeting the ferritinophagy-lysosome axis as a therapeutic vulnerability in gastroenteropancreatic neuroendocrine tumors". Cell Rep Med. 7 (4): 102695. PMC 13130658. PMID 41881024.


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