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Bisphosphoglycerate mutase

From Wikipedia, the free encyclopedia
(Redirected from BPGM)

BPGM
Crystallographic structure of dimeric human bisphosphoglycerate mutase
Identifiers
AliasesBPGM, DPGM, bisphosphoglycerate mutase, ECYT8
External IDsOMIM: 613896; MGI: 1098242; GeneCards: BPGM
Available structures
PDBOrtholog search: PDBe RCSB
Enzyme activity
EC #BRENDAExPASyKEGGMetaCyc
5.4.2.4↗↗↗↗
5.4.2.11↗↗↗↗
Orthologs
DatabasesNCBI: entry; OMA: entry
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001293085
NM_001724
NM_199186

NM_007563

RefSeq (protein)

NP_001280014
NP_001715
NP_954655

NP_031589
NP_001350637
NP_001350638
NP_001350639

Location (UCSC)Chr 7: 134.65 – 134.68 MbChr 6: 34.48 – 34.51 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse
bisphosphoglycerate mutase
Bisphosphoglycerate mutase homodimer, Human
Identifiers
EC no.5.4.2.4
CAS no.37211-69-1
Databases
BRENDAenzyme data
ExPASyNiceZyme view
KEGGenzyme entry
MetaCycmetabolic pathway
Rheareactions
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins

Bisphosphoglycerate mutase (EC 5.4.2.4) is an enzyme that in humans is encoded by the BPGM gene. It is expressed in erythrocytes[5] and placental cells.[6] It is responsible for the catalytic synthesis of 2,3-Bisphosphoglycerate (2,3-BPG) from 1,3-bisphosphoglycerate. BPGM has both a mutase and a phosphatase function, but these are much less active, in contrast to its glycolytic cousin, phosphoglycerate mutase (PGM), which favors these two functions, but can also catalyze the synthesis of 2,3-BPG to a lesser extent.

Tissue distribution

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Because the main function of bisphosphoglycerate mutase is the synthesis of 2,3-BPG, this enzyme is found only in erythrocytes and placental cells.[6] In glycolysis, converting 1,3-BPG to 2,3-BPG bypasses the ATP-generating phosphoglycerate kinase reaction, consequently, no net ATP is generated when glucose is metabolized through the Luebering–Rapoport pathway. Since the main role of 2,3-BPG is to shift the equilibrium of hemoglobin toward the deoxy-state, its production is really only useful in the cells which contain hemoglobin, such as erythrocytes and placental cells.

Function

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1,3-BPG is formed as an intermediate in glycolysis. BPGM then takes this and converts it to 2,3-BPG, which serves an important function in oxygen transport. 2,3-BPG binds with high affinity to Hemoglobin, causing a conformational change that results in the release of oxygen. Local tissues can then pick up the free oxygen. This is also important in the placenta, where fetal and maternal blood come within such close proximity. With the placenta producing 2,3-BPG, a large amount of oxygen is released from nearby maternal hemoglobin, which can then dissociate and bind with fetal hemoglobin, which has a much lower affinity for 2,3-BPG.[6]

Structure

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Overview

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BPGM is a dimer composed of two identical protein subunits, each with its own active site. Each subunit consists six β-strands, β A-F, and ten α-helices, α 1–10. Dimerization occurs along the faces of β C and α 3 of both monomers.[7] BPGM is roughly 50% identical to its PGM counterpart, with the main active-site residues conserved in nearly all PGMs and BPGMs.[7]

Important residues

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  • His11: the nucleophile of the 1,2-BPG to 1,3-BPG reaction. Rotates back and forth with the help of His-188 to get in an in-line position in order to attack the 1’ phosphate group.[8]
  • His-188: involved in overall stability of protein,[9] as well as hydrogen bonding to substrate, as His-11, which it pulls into its catalytic position.
  • Arg90: although not involved directly in binding, this positively charged residue is essential to overall stability of the protein. Can be substituted with Lysine with little effect on catalysis.[9]
  • Cys23: has little effect on overall structure, but large effect on reactivity of the enzyme.[10]

Mechanism of catalysis

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1,3-BPG binds to the active site, which causes a conformational change, in which the cleft around the active site closes in on the substrate, securely locking it in place.[8] 1,3-BPG forms a large number of hydrogen bonds to the surrounding residues, many which are positively charged, severely restricting its mobility. Its rigidity suggests a very enthalpically driven association. Conformational changes cause His11 to rotate, partially aided by hydrogen bonding to His188. His11 is brought in–line with the phosphate group, and then goes through an SN2 mechanism in which His11 is the nucleophile that attacks the phosphate group.[8] The 2’ hydroxy group then attacks the phosphate and removes it from His11, thereby creating 2,3-BPG.

References

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  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000172331 – Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000038871 – Ensembl, May 2017
  3. ↑ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ↑ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ↑ Rapoport SM, Luebering J (1950). "The formation of 2,3-diphosphoglycerate in rabbit erythrocytes: The existence of a diphosphoglycerate mutase". Journal of Biological Chemistry. 183 (2): 507–516. doi:10.1016/S0021-9258(19)51175-9.
  6. 1 2 3 Pritlove DC, Gu M, Boyd CA, Randeva HS, Vatish M (August 2006). "Novel placental expression of 2,3-bisphosphoglycerate mutase". Placenta. 27 (8): 924–7. doi:10.1016/j.placenta.2005.08.010. PMID 16246416.
  7. 1 2 PDB: 1T8P​; Wang Y, Wei Z, Bian Q, Cheng Z, Wan M, Liu L, Gong W (September 2004). "Crystal structure of human bisphosphoglycerate mutase". J. Biol. Chem. 279 (37): 39132–8. doi:10.1074/jbc.M405982200. PMID 15258155.
  8. 1 2 3 4 5 Wang Y, Liu L, Wei Z, Cheng Z, Lin Y, Gong W (December 2006). "Seeing the process of histidine phosphorylation in human bisphosphoglycerate mutase". J. Biol. Chem. 281 (51): 39642–8. doi:10.1074/jbc.M606421200. PMID 17052986.
  9. 1 2 Garel MC, Lemarchandel V, Calvin MC, Arous N, Craescu CT, Prehu MO, Rosa J, Rosa R (April 1993). "Amino acid residues involved in the catalytic site of human erythrocyte bisphosphoglycerate mutase. Functional consequences of substitutions of His10, His187 and Arg89". Eur. J. Biochem. 213 (1): 493–500. doi:10.1111/j.1432-1033.1993.tb17786.x. PMID 8477721.
  10. ↑ Ravel P, Craescu CT, Arous N, Rosa J, Garel MC (May 1997). "Critical role of human bisphosphoglycerate mutase Cys22 in the phosphatase activator-binding site". J. Biol. Chem. 272 (22): 14045–50. doi:10.1074/jbc.272.22.14045. PMID 9162026.

Further reading

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